PEDV prototype and S INDEL strain S gene panel - Specimen by NAA with probe detection   85357-2

LOINC Code


LOINC code85357-2
namePEDV prototype and S INDEL strain S gene panel - Specimen by NAA with probe detection
descriptionThis panel contains the quantitative cross threshold (Ct) values for the detection of nucleic acids within the spike (S) gene specific to the prototype and S INDEL strains of the Porcine epidemic diarrhea virus (PEDV). This assay is performed on various specimens, including fresh tissues (intestine), fluids (feces, intestinal content, oral fluid), fecal swabs, and other miscellaneous specimens (environmental, feed, feed pre-mix). This term was created for, but not limited in use to, the submitter's PEDV S gene differential PCR, which targets the highly conserved regions of the PEDV S gene in order to differentiate between the two strains of PEDV know to be circulating in North America: the original US strain (US PEDV prototype) and the variant US strain (S INDEL variant).
statusACTIVE

Fully-Specified Name

componentPorcine epidemic diarrhea virus prototype & S INDEL strain S gene panel
property-
timePt  =  Point in time:  To identify measures at a point in time. This is a synonym for “spot” or “random” as applied to urine measurements.
systemXXX
scale-
methodProbe.amp.tar

Additional Names

short namePEDV Pro+S INDEL S gene Pnl Spec NAA+pr

Basic Attributes

classPANEL.MICRO
type1  Laboratory
order vs. observationOrder

Panel Components

85356-4PEDV prototype strain S gene [Cycle Threshold #] in Specimen by NAA with probe detection
85355-6PEDV S INDEL strain S gene [Cycle Threshold #] in Specimen by NAA with probe detection

Associated Observations

LOINC codes that represent optional associated observation(s) for a clinical observation or laboratory test. A LOINC term may represent a single associated observation or panel containing several associated observations.

History/Usage

first released
last updated2.69
last change typeMIN  - change to field other than name

Related Names

3 Self-Sustaining Sequence Replication
3SR SR
Amplif
Amplification
Amplified
DNA NUCLEIC ACID PROBE
DNA probe
LAT
LCR
Ligase chain reaction
Ligation-activated transcription
Microbiology
Misc
Miscellaneous
NAA+probe
NAAT
NASBA
Nucleic acid sequence based analysis
Other
Pan
PANEL.MICROBIOLOGY
Panl
PCR
PEDv
PEDV Pro+S INDEL S gene Pnl
Pnl
Point in time
Polymerase chain reaction
Pork
Probe amp
Probe with ampification
Probe with target amplification
QBR
Random
S prime
SDA
Spec
Strand Displacement Amplification
Swine
TMA
To be specified in another part of the message
Transcription mediated amplification
Unspecified
Vet
Veterinary

Copyright © 2024 Regenstrief Institute, Inc. All Rights Reserved. To the extent included herein, the LOINC table and LOINC codes are copyright © 1995-2024, Regenstrief Institute, Inc. and the Logical Observation Identifiers Names and Codes (LOINC) Committee. See https://loinc.org/license for the full LOINC copyright and license.

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